Get UCSC track default values and track templates

Get UCSC track default values and track templates

get_track_defaults(env = new.env())

Arguments

env

environment in which to store the default values and track templates.

Value

environment which contains the default values, and template values.

Details

This function defines default values for overlay and composite track types. It also defines three templates each for overlay and composite:

• overlay_header - equivalent to superTrack

• overlay_parent - equivalent to one set of overlay tracks

• overlay_track - each overlay track

• composite_header - equivalent to one composite track

• composite_parent - equivalent to a composite view within a composite track

• composite_track - individual track within the composite track.

See also

Other jam ucsc browser functions: assign_track_defaults(), make_ucsc_trackname(), parse_ucsc_gokey()