Package index • genejam

GeneJam core functions

Functions that assist with gene annotations

freshenGenes(): Freshen gene annotations using Bioconductor annotation data

freshenGenes2(): Freshen gene annotations using Bioconductor annotation data

freshenGenes3(): Freshen gene annotations using Bioconductor annotation data

get_anno_db(): Get annotation database or environment

is_empty(): Test if vector elements are empty

Jam list functions

Functions that operate on list objects

lgsub(): Pattern replacement in a list of character vectors

Jam utility functions

Helpful utility functions

better_exists(): Better exists()

better_get(): Better get()

imget(): Case-insensitive mget()