Single-cell Amalgamation by Latent Semantic Analysis (SALSA)

This R package provides methods described in Lozoya et al https://doi.org/10.1101/551762.

SALSA is an integrative and systematic methodology that introduces matrix focusing, a parametric frequentist approach to identify fractions of statistically significant and robust data within single-cell expression matrices.

The R package also provides R-shiny SALSA, a web interface for components of the single cell analysis workflow.

Package Reference

A full online function reference is available via the pkgdown documentation:

salsa command reference

How to install

Install using the R package devtools and this command:

devtools::install_github("jmw86069/splicejam")