Skip to contents

Contrast names for SEDesign objects

Source: R/jam_sedesign.R
contrastnames.Rd

contrastnames() and contrast_names() are equivalent, returning colnames(contrasts(object)). contrastnames()<- renames contrast columns directly, accepting a character vector value with length equal to ncol(contrasts(object)). contrast_names()<- instead rebuilds the contrasts matrix using limma::makeContrasts(), accepting a character vector value of contrast names (must not contain duplicated values).

Usage

contrastnames(object, ...)

contrastnames(object, ...) <- value

contrast_names(object, ...)

contrast_names(object, ...) <- value

Arguments

object

SEDesign object

...

additional arguments are ignored

value

character vector: contrast column names (for contrastnames<-) or contrast names to rebuild via limma::makeContrasts() (for contrast_names<-)

See also

Other jam experiment design: SEDesign(), [,SEDesign-method, check_sedesign(), contrast2comp(), contrast_colors_by_group(), contrast_names_to_sedesign(), contrasts(), contrasts<-(), contrasts_to_factors(), contrasts_to_venn_setlists(), design,SEDesign-method, draw_oneway_contrast(), draw_twoway_contrast(), factors(), filter_contrast_names(), groups(), groups_to_sedesign(), plot.SEDesign(), plot_sedesign(), print,SEDesign-method, samples(), sedesign_to_factors(), sort_contrasts(), validate_sedesign()