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Plot method for SEDesign objects

Source: R/jam_plot_sedesign.R
plot.SEDesign.Rd

plot() method for SEDesign objects, a thin wrapper around plot_sedesign(). S7 objects retain their class in the S3 class() vector (see print.SEDesign()), so this S3 method is dispatched by the base plot() generic for SEDesign objects.

Usage

# S3 method for class 'SEDesign'
plot(x, ...)

Arguments

x

SEDesign object as returned by groups_to_sedesign().

...

additional arguments passed to plot_sedesign().

Value

see plot_sedesign().

See also

Other jam experiment design: SEDesign(), [,SEDesign-method, check_sedesign(), contrast2comp(), contrast_colors_by_group(), contrast_names_to_sedesign(), contrastnames(), contrasts(), contrasts<-(), contrasts_to_factors(), contrasts_to_venn_setlists(), design,SEDesign-method, draw_oneway_contrast(), draw_twoway_contrast(), factors(), filter_contrast_names(), groups(), groups_to_sedesign(), plot_sedesign(), print,SEDesign-method, samples(), sedesign_to_factors(), sort_contrasts(), validate_sedesign()

Examples

isamples_1 <- paste0(
   rep(c("DMSO", "Etop", "DMSO", "Etop"), each=6),
   "_",
   rep(c("NF", "Flag"), each=12),
   "_",
   rep(c("WT", "KO", "WT", "KO", "WT", "D955N", "WT", "D955N"), each=3),
   "_",
   LETTERS[1:3])
idf <- data.frame(jamba::rbindList(strsplit(isamples_1, "_")))[,1:3]
rownames(idf) <- isamples_1;
sedesign_1 <- groups_to_sedesign(idf)

plot(sedesign_1)