Summarize Cnet igraph as a data.frame
cnet2df(g, getNeighbors = TRUE, checkSubsets = getNeighbors, ...)igraph object containing Cnet data, specifically vertex attribute name "nodeType" with values "Set" and "Gene", and where "Set" nodes are only connected to "Gene" nodes.
logical indicating whether to include the connected neighbor node names.
logical indicating whether to test "Set" nodes to determine if the neighbors are all represented by another "Set" node.
additional arguments are ignored.
data.frame with the node name, label, degree (number of
edges), membership (based upon connected component), and
if getNeighbors=TRUE it includes comma-delimited names
of neighboring nodes.
This function provides a data.frame summary of an igraph object
containing "Cnet" data, including vertex attribute "nodeType"
with values "Set" and "Gene", and where "Set" nodes are
only connected to "Gene" nodes.
The data.frame is intended to provide a convenient method for
subsetting nodes, typically based upon a connected cluster,
or the minimum number of edges per node. For example, filter
for the connected component containing a node of interest, or
filter for "Set" nodes with more than one "Gene".
Other jam igraph functions:
cnet2im(),
cnetplotJam(),
cnetplot_internalJam(),
color_edges_by_nodegroups(),
color_edges_by_nodes_deprecated(),
color_edges_by_nodes(),
color_nodes_by_nodegroups(),
communities2nodegroups(),
drawEllipse(),
edge_bundle_bipartite(),
edge_bundle_nodegroups(),
enrichMapJam(),
fixSetLabels(),
flip_edges(),
get_bipartite_nodeset(),
igraph2pieGraph(),
jam_igraph(),
jam_plot_igraph(),
label_communities(),
layout_with_qfrf(),
layout_with_qfr(),
mem2emap(),
memIM2cnet(),
mem_multienrichplot(),
nodegroups2communities(),
rectifyPiegraph(),
relayout_with_qfr(),
removeIgraphBlanks(),
removeIgraphSinglets(),
reorderIgraphNodes(),
rotate_igraph_layout(),
spread_igraph_labels(),
subgraph_jam(),
subsetCnetIgraph(),
subset_igraph_components(),
sync_igraph_communities(),
with_qfr()
Other jam conversion functions:
cnet2im(),
enrichDF2enrichResult(),
enrichList2IM(),
enrichList2df(),
enrichMapJam()