Convert Cnet igraph to incidence matrix
cnet2im(g = NULL, df = NULL, ...)igraph object containing Cnet data, specifically vertex attribute name "nodeType" with values "Set" and "Gene", and where "Set" nodes are only connected to "Gene" nodes.
data.frame as optional input instead of g, usually
the result of a previous call to cnet2df().
additional arguments are ignored.
numeric matrix with colnames defined by "Set" node
names, and rownames defined by "Gene" node names.
This function takes igraph object containing "Cnet" data,
including vertex attribute "nodeType" with values "Set"
and "Gene", and where "Set" nodes are only connected
to "Gene" nodes. It returns an incidence matrix whose
columns are "Set" node names and whose rows are "Gene"
node names.
Other jam igraph functions:
cnet2df(),
cnetplotJam(),
cnetplot_internalJam(),
color_edges_by_nodegroups(),
color_edges_by_nodes_deprecated(),
color_edges_by_nodes(),
color_nodes_by_nodegroups(),
communities2nodegroups(),
drawEllipse(),
edge_bundle_bipartite(),
edge_bundle_nodegroups(),
enrichMapJam(),
fixSetLabels(),
flip_edges(),
get_bipartite_nodeset(),
igraph2pieGraph(),
jam_igraph(),
jam_plot_igraph(),
label_communities(),
layout_with_qfrf(),
layout_with_qfr(),
mem2emap(),
memIM2cnet(),
mem_multienrichplot(),
nodegroups2communities(),
rectifyPiegraph(),
relayout_with_qfr(),
removeIgraphBlanks(),
removeIgraphSinglets(),
reorderIgraphNodes(),
rotate_igraph_layout(),
spread_igraph_labels(),
subgraph_jam(),
subsetCnetIgraph(),
subset_igraph_components(),
sync_igraph_communities(),
with_qfr()
Other jam conversion functions:
cnet2df(),
enrichDF2enrichResult(),
enrichList2IM(),
enrichList2df(),
enrichMapJam()