cnetplot internal function
cnetplot_internalJam(
inputList,
categorySize = "geneNum",
showCategory = 5,
pvalue = NULL,
foldChange = NULL,
fixed = TRUE,
DE.foldChange = NULL,
categoryColor = "#E5C494",
geneColor = "#B3B3B3",
colorRamp = "RdBu_r",
...
)This function is intended to mimic the DOSE:::cnetplot_internal()
function to support cnetplotJam() customizations, including
not plotting the output, and including additional custom igraph
attributes.
Other jam igraph functions:
cnet2df(),
cnet2im(),
cnetplotJam(),
color_edges_by_nodegroups(),
color_edges_by_nodes_deprecated(),
color_edges_by_nodes(),
color_nodes_by_nodegroups(),
communities2nodegroups(),
drawEllipse(),
edge_bundle_bipartite(),
edge_bundle_nodegroups(),
enrichMapJam(),
fixSetLabels(),
flip_edges(),
get_bipartite_nodeset(),
igraph2pieGraph(),
jam_igraph(),
jam_plot_igraph(),
label_communities(),
layout_with_qfrf(),
layout_with_qfr(),
mem2emap(),
memIM2cnet(),
mem_multienrichplot(),
nodegroups2communities(),
rectifyPiegraph(),
relayout_with_qfr(),
removeIgraphBlanks(),
removeIgraphSinglets(),
reorderIgraphNodes(),
rotate_igraph_layout(),
spread_igraph_labels(),
subgraph_jam(),
subsetCnetIgraph(),
subset_igraph_components(),
sync_igraph_communities(),
with_qfr()