Value incidence matrix to list
Usage
im_value2list(x, empty = c(NA, "", 0), ...)Value
list whose names are set names derived from colnames(x),
and where each vector is named using rownames(x) and the
values from x, for non-empty values.
Details
This function is the reciprocal to list2im_value().
A value incidence matrix is a matrix whose non-empty values are retained in each item vector, where items are stored as vector names.
This function is most commonly used with signed values
c(-1, 0, 1), to indicate direction where 1 is up,
-1 is down, and 0 is not changed. In this case 0
which is considered empty by default.
See also
Other venndir conversion:
counts2setlist(),
im2list(),
list2im_opt(),
list2im_value(),
overlaplist2setlist(),
signed_counts2setlist()
Examples
setlist <- make_venn_test(100, 3, do_signed=TRUE)
ims <- list2im_value(setlist);
print(head(ims));
#> set_A set_B set_C
#> item_067 -1 0 0
#> item_042 1 0 0
#> item_050 1 0 -1
#> item_043 -1 0 0
#> item_014 -1 0 0
#> item_025 1 -1 0
# convert back to list
im_value2list(ims);
#> $set_A
#> item_067 item_042 item_050 item_043 item_014 item_025 item_090 item_091
#> -1 1 1 -1 -1 1 -1 -1
#> item_069 item_093 item_057 item_009 item_072 item_026 item_007 item_099
#> -1 1 1 -1 1 1 -1 -1
#> item_089 item_083 item_036 item_078 item_097 item_076 item_015 item_032
#> -1 1 1 1 1 1 -1 1
#> item_086 item_084 item_041 item_023 item_027 item_060 item_053 item_079
#> 1 1 -1 1 -1 1 1 -1
#>
#> $set_B
#> item_025 item_069 item_093 item_072 item_089 item_097 item_076 item_027
#> -1 -1 1 1 -1 -1 1 -1
#> item_053 item_096 item_038 item_034 item_063 item_013 item_082 item_021
#> 1 1 -1 -1 1 1 1 -1
#>
#> $set_C
#> item_050 item_090 item_091 item_072 item_086 item_041 item_060 item_079
#> -1 -1 1 1 1 -1 1 -1
#> item_047 item_095 item_016 item_006 item_039 item_031 item_081
#> 1 1 1 -1 1 -1 1
#>
# make a simple character vector list
setlistv <- lapply(setlist, function(i){
j <- letters[i+3];
names(j) <- names(i);
j;
})
imv <- list2im_value(setlistv);
print(head(imv));
#> set_A set_B set_C
#> item_067 "b" "" ""
#> item_042 "d" "" ""
#> item_050 "d" "" "b"
#> item_043 "b" "" ""
#> item_014 "b" "" ""
#> item_025 "d" "b" ""
im_value2list(imv);
#> $set_A
#> item_067 item_042 item_050 item_043 item_014 item_025 item_090 item_091
#> "b" "d" "d" "b" "b" "d" "b" "b"
#> item_069 item_093 item_057 item_009 item_072 item_026 item_007 item_099
#> "b" "d" "d" "b" "d" "d" "b" "b"
#> item_089 item_083 item_036 item_078 item_097 item_076 item_015 item_032
#> "b" "d" "d" "d" "d" "d" "b" "d"
#> item_086 item_084 item_041 item_023 item_027 item_060 item_053 item_079
#> "d" "d" "b" "d" "b" "d" "d" "b"
#>
#> $set_B
#> item_025 item_069 item_093 item_072 item_089 item_097 item_076 item_027
#> "b" "b" "d" "d" "b" "b" "d" "b"
#> item_053 item_096 item_038 item_034 item_063 item_013 item_082 item_021
#> "d" "d" "b" "b" "d" "d" "d" "b"
#>
#> $set_C
#> item_050 item_090 item_091 item_072 item_086 item_041 item_060 item_079
#> "b" "b" "d" "d" "d" "b" "d" "b"
#> item_047 item_095 item_016 item_006 item_039 item_031 item_081
#> "d" "d" "d" "b" "d" "b" "d"
#>