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Get SE assay data

Source: R/se_to_assays.R
se_to_assay_data.Rd

Get SE assay data consistently for SummarizedExperiment, SingleCellExperiment, Seurat data, NanoStringGeoMxSet, and generic Biobase eSet compatible objects that provide assayData().

Usage

se_to_assay_data(se, assay_name = NULL, ...)

Arguments

se

SummarizedExperiment or other recognized data type inheriting from either SummarizedExperiment, ExpressionSet, eSet, or Seurat.

...

additional arguments are ignored.

Value

character vector with corresponding assay names

See also

Other jamses SE utilities: geomx_to_se(), make_se_test(), se_collapse_by_column(), se_collapse_by_row(), se_detected_rows(), se_normalize(), se_rbind(), se_to_assay_names(), se_to_rowcoldata(), simulate_se_test()