Get gaps in GRanges
getGRgaps(gr, strandSpecific = TRUE, verbose = FALSE, ...)
gr | GRanges object |
---|---|
strandSpecific | logical indicating whether to convert strand
to |
verbose | logical indicating whether to print verbose output. |
... | additional arguments are passed to |
This function returns the gaps between GRanges regions, calculated
for each chromosome (using GenomicRanges::seqnames(gr)
), and when strandSpecific=TRUE
it determines gaps in stranded fashion.
Other jam GRanges functions:
addGRLgaps()
,
addGRgaps()
,
annotateGRLfromGRL()
,
annotateGRfromGR()
,
assignGRLexonNames()
,
closestExonToJunctions()
,
combineGRcoverage()
,
exoncov2polygon()
,
findOverlapsGRL()
,
flattenExonsBy()
,
getFirstStrandedFromGRL()
,
getGRLgaps()
,
getGRcoverageFromBw()
,
grl2df()
,
jam_isDisjoint()
,
make_ref2compressed()
,
sortGRL()
,
spliceGR2junctionDF()
,
stackJunctions()