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Alpha shape calculation

Source: R/jam-ashape.R
ashape.Rd

Alpha shape calculation for a set of points, and alpha threshold

Usage

ashape(x, y = NULL, alpha, ...)

Arguments

x, y

numeric vector with coordinate points.

alpha

numeric with alpha threshold to use.

...

additional arguments are ignored.

Value

ashape object, which is a list containing:

  • edges: x,y coordinates of Delauney triangulation of the alpha-shape.

  • length: length of the alpha-shape.

  • alpha: value of alpha used.

  • alpha.extremes: integer index of points which were alpha-extremes.

  • delvor.obj: delvor object with Delauney/Voronoi supporting data.

  • x: x,y coordinates of input data

Details

This function is primarily intended to be called by make_point_hull(), since that function also iterates alpha values until it finds a suitable, and successful, threshold.

See also

Other jam utility functions: avg_angles(), avg_colors_by_list(), bulk_cnet_adjustments(), call_fn_ellipsis_deprecated(), cell_fun_bivariate(), collapse_mem_clusters(), colorRamp2D(), deconcat_df2(), display_colorRamp2D(), enrichList2geneHitList(), filter_mem_genes(), filter_mem_sets(), find_colname(), find_enrich_colnames(), get_hull_data(), get_igraph_layout(), gsubs_remove(), handle_igraph_param_list(), isColorBlank(), make_legend_bivariate(), make_point_hull(), mem_find_overlap(), order_colors(), rank_mem_clusters(), rotate_coordinates(), subgraph_jam(), subset_mem(), summarize_node_spacing(), xyAngle()

Examples

n <- 300
theta <- runif(n, 0, 2*pi)
r <- sqrt(runif(n, 0.25^2, 0.5^2))
x <- cbind(0.5+r*cos(theta), 0.5+r*sin(theta))
alpha <- 0.1
ashape.obj <- ashape(x, alpha=alpha)

plot(ashape.obj$x, asp=1)
segments(x0=ashape.obj$edges[, "x1"], x1=ashape.obj$edges[, "x2"],
   y0=ashape.obj$edges[, "y1"], y1=ashape.obj$edges[, "y2"])