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Extract gene hit list from list of enrichResult

Source: R/jamenrich-utils.R
enrichList2geneHitList.Rd

Extract gene hit list from list of enrichResult

Usage

enrichList2geneHitList(
  enrichList,
  geneColname,
  geneDelim = "[,/ ]",
  make_unique = TRUE,
  verbose = FALSE,
  ...
)

Value

list of character vectors, containing the unique set of genes involved in each enrichment.

Details

This function is mainly for internal use in multienrichjam, it takes a list of enrichResult objects, and determines the full set of genes involved in each enrichResult.

This function also works with ComplexHeatmap::HeatmapList objects.

See also

Other jam utility functions: ashape(), avg_angles(), avg_colors_by_list(), bulk_cnet_adjustments(), call_fn_ellipsis_deprecated(), cell_fun_bivariate(), collapse_mem_clusters(), colorRamp2D(), deconcat_df2(), display_colorRamp2D(), filter_mem_genes(), filter_mem_sets(), find_colname(), find_enrich_colnames(), get_hull_data(), get_igraph_layout(), gsubs_remove(), handle_igraph_param_list(), isColorBlank(), make_legend_bivariate(), make_point_hull(), mem_find_overlap(), order_colors(), rank_mem_clusters(), rotate_coordinates(), subgraph_jam(), subset_mem(), summarize_node_spacing(), xyAngle()