R/jamenrich-subset-mem.R
filter_mem_genes.RdFilter mem multienrichment object by Gene names
filter_mem_genes(mem, includeGenes = NULL, ...)list object returned by multiEnrichMap()
character vector of genes, matched with
rownames(mem$memIM)
additional arguments are ignored
list object of mem data content
This is intended to be an internal function. It simply takes a
character vector of gene names, and subsets incidence matrix data
in the mem object. It performs no other filtering.
This function is called by subset_mem(), the recommended method
to subset a mem object.
Other jam utility functions:
avg_angles(),
avg_colors_by_list(),
call_fn_ellipsis_deprecated(),
cell_fun_bivariate(),
collapse_mem_clusters(),
colorRamp2D(),
deconcat_df2(),
display_colorRamp2D(),
enrichList2geneHitList(),
filter_mem_sets(),
find_colname(),
get_hull_data(),
get_igraph_layout(),
gsubs_remove(),
handle_igraph_param_list(),
isColorBlank(),
make_legend_bivariate(),
make_point_hull(),
mem_find_overlap(),
order_colors(),
rank_mem_clusters(),
rotate_coordinates(),
subgraph_jam(),
subset_mem(),
summarize_node_spacing(),
xyAngle()