Filter mem multienrichment object by Gene names

Filter mem multienrichment object by Gene names

Usage

filter_mem_genes(mem, includeGenes = NULL, ...)

Arguments

mem

list object returned by multiEnrichMap()

includeGenes

character vector of genes, matched with rownames(mem$memIM)

...

additional arguments are ignored

Value

list object of mem data content

Details

This is intended to be an internal function. It simply takes a character vector of gene names, and subsets incidence matrix data in the mem object. It performs no other filtering. This function is called by subset_mem(), the recommended method to subset a mem object.

See also

Other jam utility functions: ashape(), avg_angles(), avg_colors_by_list(), bulk_cnet_adjustments(), call_fn_ellipsis_deprecated(), cell_fun_bivariate(), collapse_mem_clusters(), colorRamp2D(), deconcat_df2(), display_colorRamp2D(), enrichList2geneHitList(), filter_mem_sets(), find_colname(), find_enrich_colnames(), get_hull_data(), get_igraph_layout(), gsubs_remove(), handle_igraph_param_list(), isColorBlank(), make_legend_bivariate(), make_point_hull(), mem_find_overlap(), order_colors(), rank_mem_clusters(), rotate_coordinates(), subgraph_jam(), subset_mem(), summarize_node_spacing(), xyAngle()