R/jamenrich-get-igraph-layout.R
get_igraph_layout.RdObtain or create layout for igraph object
get_igraph_layout(g, layout = NULL, make_circular = TRUE, verbose = FALSE, ...)igraph object
one of:
numeric matrix of layout coordinates, with nrow(layout)
equal to the number of nodes igraph::vcount(g).
function that takes igraph input, and returns numeric matrix
of layout coordinates.
NULL: to use the layout embedded in g using
igraph::graph_attr(g, "layout") if it exists. If it does not exist,
then make_circular=TRUE causes a new layout to be created with
arbitrary circular coordinates; or make_circular=FALSE will return
NULL.
logical indicating whether to create a makeshift
layout when the input data does not already contain layout coordinates,
and when layout is not supplied.
logical indicating whether to print verbose output.
additional arguments are ignored.
numeric matrix of x,y coordinates with nrow equal
to the number of nodes in the input, from igraph::vcount(g).
Note that rownames() are defined to match node names
igraph::V(g)$name, unlike default igraph layouts.
This function is a simple helper function intended to retrieve
the node layout for an igraph object. When layout is supplied
as a function it is used to define a specific layout matrix.
Other jam utility functions:
avg_angles(),
avg_colors_by_list(),
call_fn_ellipsis_deprecated(),
cell_fun_bivariate(),
collapse_mem_clusters(),
colorRamp2D(),
deconcat_df2(),
display_colorRamp2D(),
enrichList2geneHitList(),
filter_mem_genes(),
filter_mem_sets(),
find_colname(),
get_hull_data(),
gsubs_remove(),
handle_igraph_param_list(),
isColorBlank(),
make_legend_bivariate(),
make_point_hull(),
mem_find_overlap(),
order_colors(),
rank_mem_clusters(),
rotate_coordinates(),
subgraph_jam(),
subset_mem(),
summarize_node_spacing(),
xyAngle()