• Venndir Book
  • Preface
    • Does the world need another Venn tool?
      • Venndir is customizable
      • Directionality is important
      • The arrows aren't just decorative, they're insightful
      • Visualize with purpose. Annotate with direction.
      • Put ‘What are those?’ to rest, one label at a time.
      • Inspired by curiosity, designed for clarity, sharpened by use.
    • Supporting Tools
      • Graphics
      • Fonts and Labels
  • 1 What is a Venn diagram?
    • 1.1 Problem Statement
  • 2 Data Import
    • 2.1 Common Data Input Types
      • 2.1.1 List of sets
      • 2.1.2 List of signed sets
      • 2.1.3 Incidence matrix
      • 2.1.4 Signed incidence matrix
      • 2.1.5 Overlap counts
      • 2.1.6 Signed overlap counts
      • 2.1.7 Overlap list
      • 2.1.8 Signed overlap list
      • 2.1.9 Items
      • 2.1.10 List of data frames
    • 2.2 Specialized Input Types
      • 2.2.1 limma
      • 2.2.2 DESeq2
  • 3 Venndir Basics
    • 3.1 Default Venndir
      • 3.1.1 Data for Testing
      • 3.1.2 Create the Venn
      • 3.1.3 Create the Euler
    • 3.2 Venn Set Colors
      • 3.2.1 Consistent Set Colors
      • 3.2.2 Venndir Without Color
    • 3.3 Venndir Labels
      • 3.3.1 Label Content
      • 3.3.2 Overlap Type
      • 3.3.3 Signed Label Placement
      • 3.3.4 Visual Styles
      • 3.3.5 Nudge a Venn Label
      • 3.3.6 Label Placement Rules
    • 3.4 Item Labels
      • 3.4.1 Overview of item labeling
      • 3.4.2 Venn Memes
      • 3.4.3 Item Label Basics
      • 3.4.4 Item layout adjustments
      • 3.4.5 Item buffer
    • 3.5 Fonts and Font Sizes
      • 3.5.1 Font Sizes
      • 3.5.2 Overall Font Family
      • 3.5.3 Individual Font Families
      • 3.5.4 Available Font Families
    • 3.6 Venn Legends
      • 3.6.1 Hide percent or signed labels
      • 3.6.2 Custom legend labels
      • 3.6.3 Additional alias labels
      • 3.6.4 Separate Size and Sign
      • 3.6.5 Legend color style
      • 3.6.6 Legend position
      • 3.6.7 Legend font size
      • 3.6.8 Legend custom fontfamily
    • 3.7 Figure Scale and Position
      • 3.7.1 Text Venn
  • 4 Deeper Customizations
    • 4.1 Venndir Borders
      • 4.1.1 Venndir Rendering Steps
      • 4.1.2 Customize Venndir borders
    • 4.2 Modify Venn Overlaps
      • 4.2.1 Overlap Attributes
    • 4.3 Customize Any Label
    • 4.4 Automatic Text Contrast
    • 4.5 Highlight Venn Overlaps
    • 4.6 Rotate the Venndir
    • 4.7 Nudge the Legend
    • 4.8 Hidden Overlaps
      • 4.8.1 Nudge Venndir Circles
    • 4.9 Nudge specific labels
    • 4.10 Venndir Markdown Support
      • 4.10.1 Inline styles
      • 4.10.2 Inline Images
    • 4.11 Patchwork with Venndir
    • 4.12 Custom Signs
      • 4.12.1 Review Sign Curation
      • 4.12.2 Customize the Symbols
      • 4.12.3 More Advanced Signs
      • 4.12.4 Custom Sign Label Colors
    • 4.13 Venndir Graphics Objects
      • 4.13.1 Venndir gtree
      • 4.13.2 Venndir grob_list
      • 4.13.3 Manipulate grob_list
  • 5 Venndir Gallery
    • 5.1 Figure Boosting
      • 5.1.1 Me - Electron
      • 5.1.2 eulerGlyphs
    • 5.2 Venndir Case Studies
      • 5.2.1 Seehawer Kmt2 Gene Venns
  • 6 What's New by Version
    • 6.0.1 v0.3.0 | 13 July 2025
    • v0.2.0 | 06 July 2025 | venndir v0.0.58.900
    • v0.1.0 | 26 June 2025 | venndir v0.0.56.900
  • 7 Glossary
  • References
  • Published with bookdown

Venndir Book

Chapter 5 Venndir Gallery